Basic information   
Locus name LOC_Os01g50770
AliasSPL28
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryProtein degradation/modification
Effect for Senescencedelay
Gene DescriptionSPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit μ1 (AP1M1), which is involved in the post-Golgi trafficking pathway. A green fluorescent protein (GFP) fusion protein of SPL28 (SPL28::GFP) localized to the Golgi apparatus.
EvidenceMolecular evidence:GFP [Ref 1]
References
1: Qiao Y, Jiang W, Lee J, Park B, Choi MS, Piao R, Woo MO, Roh JH, Han L, Paek NC, Seo HS, Koh HJ
SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa).
New Phytol. 2010 Jan;185(1):258-74

Gene Ontology
biological process
cellular component
Protein-Protein Interaction
STRING
SequenceLOC_Os01g50770.1 | Genomic | mRNA | CDS | Protein
Mutant information   
Mutant name spl28
Mutant/Transgenic mutant
Ecotype Hwacheongbyeo (an elite Korean japonica cultivar)
Mutagenesis type N-methyl-N-nitrosourea (MNU) treatment
miRNA Interaction      
Details
target: LOC_Os01g50770 
miRNA: osa-miR1438
mfe: -21.1 kcal/mol 
p-value: 0.024053 

position:  993 
target 5' U               C A      U 3' 
           UUGAGAAUGAUAGAA U UAUCCU  
           AAUUUUUACUAUUUU A AUGGGA  
miRNA  3'                            5' 
Ortholog Group      
Ortholog Groups: OG5_127474
AccessionTaxon
NP_172543Arabidopsis thaliana
NP_176277Arabidopsis thaliana
CMJ102CCyanidioschyzon merolae strain 10D
182329Chlamydomonas reinhardtii
ACO61759Micromonas sp. RCC299
NP_001044001 ( LOC_Os01g50770 ) Oryza sativa Japonica Group
NP_001056201Oryza sativa Japonica Group
e_gw1.07.00.209.1Ostreococcus tauri
estExt_fgenesh1_pg.C_3280033Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3000002Physcomitrella patens subsp. patens
27504.m000626Ricinus communis
30147.m013894Ricinus communis
e_gw1.14.93.1Thalassiosira pseudonana CCMP1335
XP_002945806Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR119982.5E-2704429No hitNA
PANTHERPTHR11998:SF112.5E-2704429No hitNA
PIRSFPIRSF0059925.5E-2164428IPR001392Clathrin adaptor, mu subunit
Gene3DG3DSA:3.30.450.605.9E-425142No hitNA
PfamPF012171.2E-55132IPR022775AP complex, mu/sigma subunit
SUPERFAMILYSSF643568.2E-365142IPR011012Longin-like domain
PRINTSPR003141.6E-641535IPR001392Clathrin adaptor, mu subunit
PRINTSPR003141.6E-64104131IPR001392Clathrin adaptor, mu subunit
Gene3DG3DSA:2.60.40.11708.3E-67160322No hitNA
PfamPF009288.2E-92160427IPR008968Clathrin adaptor, mu subunit, C-terminal
ProSitePatternsPS00990NA160180IPR018240Clathrin adaptor, mu subunit, conserved site
SUPERFAMILYSSF494476.5E-96160427IPR008968Clathrin adaptor, mu subunit, C-terminal
PRINTSPR003141.6E-64162190IPR001392Clathrin adaptor, mu subunit
ProSiteProfilesPS51072100.2168428IPR008968Clathrin adaptor, mu subunit, C-terminal
PRINTSPR003141.6E-64237264IPR001392Clathrin adaptor, mu subunit
ProSitePatternsPS00991NA257271IPR018240Clathrin adaptor, mu subunit, conserved site
PRINTSPR003141.6E-64306321IPR001392Clathrin adaptor, mu subunit
PRINTSPR003141.6E-64346357IPR001392Clathrin adaptor, mu subunit

© Center for Bioinformatics(CBI), Peking University