Basic information   
Locus name AT1G02310
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryLipid/Carbohydrate metabolism
Effect for Senescenceunclear
Gene Descriptionglycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative similar to (1-4)-beta-mannan endohydrolase precursor GI:9836826 from [Lycopersicon esculentum]
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
Protein-Protein Interaction
STRING
SequenceAT1G02310.1 | Genomic | mRNA | CDS | Protein
Microarray   
Expression Level (Log2 ratio)
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_130289
AccessionTaxon
NP_171733 ( AT1G02310 ) Arabidopsis thaliana
NP_179660Arabidopsis thaliana
NP_187700Arabidopsis thaliana
NP_187701Arabidopsis thaliana
NP_189675Arabidopsis thaliana
NP_194561Arabidopsis thaliana
NP_195813Arabidopsis thaliana
NP_201447Arabidopsis thaliana
152688Chlamydomonas reinhardtii
171220Chlamydomonas reinhardtii
205906Chlamydomonas reinhardtii
ACO62742Micromonas sp. RCC299
ACO64669Micromonas sp. RCC299
NP_001043785Oryza sativa Japonica Group
NP_001044230Oryza sativa Japonica Group
NP_001048226Oryza sativa Japonica Group
NP_001051776Oryza sativa Japonica Group
NP_001051777Oryza sativa Japonica Group
e_gw1.20.00.34.1Ostreococcus tauri
gw1.04.00.273.1Ostreococcus tauri
e_gw1.180.117.1Physcomitrella patens subsp. patens
e_gw1.22.71.1Physcomitrella patens subsp. patens
e_gw1.41.196.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_830086Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_4290009Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_50204Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_53000005Physcomitrella patens subsp. patens
fgenesh2_pg.scaffold_115000063Physcomitrella patens subsp. patens
gw1.23.41.1Physcomitrella patens subsp. patens
29915.m000486Ricinus communis
29983.m003185Ricinus communis
30076.m004513Ricinus communis
30170.m014073Ricinus communis
XP_002948645Volvox carteri f. nagariensis
XP_002954335Volvox carteri f. nagariensis
XP_002959243Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR314514.6E-2401406No hitNA
Gene3DG3DSA:3.20.20.808.4E-12228404IPR013781Glycoside hydrolase, catalytic domain
SUPERFAMILYSSF514453.7E-8028376IPR017853Glycoside hydrolase, superfamily
PfamPF001501.6E-1240326IPR001547Glycoside hydrolase, family 5
Subcellular Localization   
Localizationextracellular
EvidenceSUBAcon
Pubmed ID23180787

© Center for Bioinformatics(CBI), Peking University