Basic information   
Locus name AT1G01490
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling
Effect for Senescenceunclear
Gene Descriptionheavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport. Gene expression is increased during leaf senescence.
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston V
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
biological process
molecular function
Protein-Protein Interaction
STRING
SequenceAT1G01490.1 | Genomic | mRNA | CDS | Protein
AT1G01490.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT1G01490.1 
miRNA: ath-miR5021
mfe: -26.8 kcal/mol 
p-value: 0.000229 

position: 167 
target 5' A    A              U  3' 
           UUUC UUCUUCUUCUUCUU     
           AAAG AAGAAGAAGAAGAG     
miRNA  3' A                   U  5' 
Ortholog Group      
Ortholog Groups: OG5_159987
AccessionTaxon
NP_001030928 ( AT1G01490 ) Arabidopsis thaliana
NP_171656Arabidopsis thaliana
NP_001048827Oryza sativa Japonica Group
NP_001065148Oryza sativa Japonica Group
NP_001066660Oryza sativa Japonica Group
30190.m011271Ricinus communis
50537.m000016Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR228143.2E-691177No hitNA
PANTHERPTHR22814:SF53.2E-691177No hitNA
SUPERFAMILYSSF550081.1E-5158IPR006121Heavy metal-associated domain, HMA
PfamPF004034.5E-7757IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1004.6E-51858No hitNA

© Center for Bioinformatics(CBI), Peking University