Basic information   
Locus name LOC_Os01g42810
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionLeaf senescence related protein, putative, expressed
EvidenceMolecular evidence:Homolog analysis [Ref 1]
References
1: Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
The TIGR Rice Genome Annotation Resource: improvements and new features.
Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7

Protein-Protein Interaction
STRING
SequenceLOC_Os01g42810.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g42810.1 
miRNA: osa-miR394
mfe: -32.9 kcal/mol 
p-value: 0.001255 

position: 988 
target 5' U     C              U  3' 
           GGAGG GGACGGAA GCCGG     
           CCUCC CCUGUCUU CGGUU     
miRNA  3'       A        A        5' 

target: LOC_Os01g42810.1 
miRNA: osa-miR5075
mfe: -42.4 kcal/mol 
p-value: 0.000113 

position: 588 
target 5' G                 C    G  3' 
           GCGG CGGCGGCGGCGG GGGA     
           CGCC GCCGCCGCUGCC UCUU     
miRNA  3'      U                    5' 
Ortholog Group      
Ortholog Groups: OG5_242600
AccessionTaxon
NP_001043565 ( LOC_Os01g42810 ) Oryza sativa Japonica Group
NP_001056472Oryza sativa Japonica Group
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR322851.0E-142115479No hitNA
PfamPF144164.1E-21128184IPR025846PMR5 N-terminal domain
PfamPF138399.3E-65202471IPR026057PC-Esterase

© Center for Bioinformatics(CBI), Peking University