Basic information   
Locus name AT1G04250
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation:AUX-IAA
Effect for SenescenceUnclear
Gene DescriptionUpregulated in senescent leaves
EvidenceMolecular evidence:Real-Time PCR [Ref 1]
References
1: Balazadeh S, Riaño-Pachón DM, Mueller-Roeber B
Transcription factors regulating leaf senescence in Arabidopsis thaliana.
Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75

Gene Ontology
biological process
cellular component
molecular function
Protein-Protein Interaction
STRING
SequenceAT1G04250.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT1G04250.1 
miRNA: ath-miR847
mfe: -27.6 kcal/mol 
p-value: 0.006396 

position:  580 
target 5' A   G          A   A   U 3' 
           CAU GAGGAGAAGA GGA UGA  
           GUA UUCUUCUUCU CCU ACU  
miRNA  3'     G              C     5' 
Ortholog Group      
Ortholog Groups: OG5_144920
AccessionTaxon
NP_171921 ( AT1G04250 ) Arabidopsis thaliana
NP_187124Arabidopsis thaliana
NP_188945Arabidopsis thaliana
NP_193191Arabidopsis thaliana
NP_974355Arabidopsis thaliana
NP_001043847Oryza sativa Japonica Group
NP_001051230Oryza sativa Japonica Group
NP_001056300Oryza sativa Japonica Group
NP_001067209Oryza sativa Japonica Group
estExt_Genewise1.C_1840013Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_730007Physcomitrella patens subsp. patens
29598.m000460Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR317347.1E-1146229No hitNA
PfamPF023096.6E-857221IPR003311AUX/IAA protein
SUPERFAMILYSSF542771.9E-19108210No hitNA
ProSiteProfilesPS5096229.6111212IPR011525Aux/IAA-ARF-dimerisation
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787

© Center for Bioinformatics(CBI), Peking University