Basic information   
Locus name AT5G39610
AliasORE1/AtNAC092/AtNAC2/AtNAC06
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation:NAC
Effect for Senescencepromote
Gene DescriptionORE1 expression is up-regulated concurrently with leaf aging by EIN2 but is negatively regulated by miR164. miR164 expression gradually decreases with aging through negative regulation by EIN2, which leads to the elaborate up-regulation of ORE1 expression.
EvidenceGenetic evidence:Mutant [Ref 1, Ref 2]; Genomic evidence:microarray data [Ref 3]
References
1: Kim JH, Woo HR, Kim J, Lim PO, Lee IC, Choi SH, Hwang D, Nam HG
Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis.
Science 2009 Feb 20;323(5917):1053-7

2: Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Köhler B, Mueller-Roeber B
A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.
Plant J. 2010 Apr;62(2):250-64

3: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
Protein-Protein Interaction
STRING
SequenceAT5G39610.1 | Genomic | mRNA | CDS | Protein
Mutant information   
Mutated 1
Mutant name ore1-1
Mutant/Transgenic mutant
Ecotype Col-0
Mutagenesis type EMS
Mutated 2
Mutant name ors1-1/anac092-1
Mutant/Transgenic mutant
Ecotype Col-0
Mutagenesis type T-DNA insertion_knock out
Mutated 3
Mutant name anac092-1
Mutant/Transgenic mutant
Ecotype Col-0
Mutagenesis type T-DNA insertion_knock out
Mutated 4
Mutant name ANAC092-IOE
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Mutated 5
Mutant name ANAC092-RNAi
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type RNAi
Mutated 6
Mutant name 35S:ORE1
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Mutated 7
Mutant name 35S:ORE1/35S:GLK2
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Mutated 8
Mutant name 35S:ANAC092
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Microarray   
Expression Level (Log2 ratio)
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_212463
AccessionTaxon
NP_189546Arabidopsis thaliana
NP_198777 ( AT5G39610 ) Arabidopsis thaliana
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR317445.0E-1561273No hitNA
SUPERFAMILYSSF1019415.9E-6416170IPR003441No apical meristem (NAM) protein
PfamPF023653.1E-5420146IPR003441No apical meristem (NAM) protein
ProSiteProfilesPS5100559.720170IPR003441No apical meristem (NAM) protein
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787

© Center for Bioinformatics(CBI), Peking University