Basic information   
Locus name AT1G05340
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers:Unknown
Effect for SenescenceUnclear
Gene DescriptionLOCATED IN: chloroplast. Unknown Protein
EvidenceMolecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References
1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M
Large-scale identification of leaf senescence-associated genes.
Plant J. 2003 Dec;36(5):629-42

2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston V
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Protein-Protein Interaction
STRING
SequenceAT1G05340.1 | Genomic | mRNA | CDS | Protein
Microarray   
Expression Level (Log2 ratio)
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_144902
AccessionTaxon
NP_001077990Arabidopsis thaliana
NP_001154638Arabidopsis thaliana
NP_180779Arabidopsis thaliana
NP_563734 ( AT1G05340 ) Arabidopsis thaliana
NP_565739Arabidopsis thaliana
NP_565740Arabidopsis thaliana
NP_566702Arabidopsis thaliana
NP_566703Arabidopsis thaliana
NP_850623Arabidopsis thaliana
NP_001061235Oryza sativa Japonica Group
30106.m000660Ricinus communis
30169.m006354Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF127347.6E-152572No hitNA
Subcellular Localization   
Localizationcytosol
EvidenceSUBAcon
Pubmed ID23180787

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