Basic information   
Locus name LOC_Os01g05670
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Macromolecule metabolism
Effect for SenescenceUnclear
Gene DescriptionSynaptic glycoprotein SC2, putative, expressed
EvidenceMolecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
biological process
cellular component
molecular function
Pathway
Reactome
Protein-Protein Interaction
STRING
SequenceLOC_Os01g05670.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g05670 
miRNA: osa-miR1857-5p
mfe: -24.3 kcal/mol 
p-value: 0.060509 

position:  102 
target 5' U  G      C      C     G 3' 
           CC UCGUGU CCGGAG GGCCG  
           GG AGUACG GGUUUU UUGGU  
miRNA  3'           A      U       5' 

target: LOC_Os01g05670 
miRNA: osa-miR529b
mfe: -27.6 kcal/mol 
p-value: 0.004949 

position:  57 
target 5' C     C            C  G 3' 
           GAGCU U CUCUCUCUCU UC  
           UUCGA A GAGAGAGAGA AG  
miRNA  3'       C U             A 5' 
Ortholog Group      
Ortholog Groups: OG5_127767
AccessionTaxon
NP_191096Arabidopsis thaliana
CMD146CCyanidioschyzon merolae strain 10D
602Chlamydomonas reinhardtii
ACO64917Micromonas sp. RCC299
NP_001042030 ( LOC_Os01g05670 ) Oryza sativa Japonica Group
e_gw1.03.00.379.1Ostreococcus tauri
estExt_Genewise1.C_150332Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_15000263Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_54000031Physcomitrella patens subsp. patens
30003.m000326Ricinus communis
XP_002946045Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR105561.8E-1421310No hitNA
PANTHERPTHR10556:SF281.8E-1421310No hitNA
PfamPF025444.6E-28159309IPR0011043-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
ProSiteProfilesPS5024422.6199280IPR0011043-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal

© Center for Bioinformatics(CBI), Peking University