Basic information   
Locus name LOC_Os01g51410
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Macromolecule metabolism
Effect for SenescenceUnclear
Gene DescriptionGlycine dehydrogenase, mitochondrial precursor
EvidenceMolecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
biological process
molecular function
Pathway
KEGG
Protein-Protein Interaction
STRING
SequenceLOC_Os01g51410.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g51410 
miRNA: osa-miR1424
mfe: -27.5 kcal/mol 
p-value: 0.025420 

position:  357 
target 5' G              A     G 3' 
           GCGAU GGCGUCGG GUGCG  
           UGUUA UCGUAGUC CACGU  
miRNA  3'       G        A     A 5' 

target: LOC_Os01g51410 
miRNA: osa-miR1429-3p
mfe: -27.3 kcal/mol 
p-value: 0.083030 

position:  1232 
target 5' U   G             G   A 3' 
           GGC AUGCAGACCCG G AGC  
           UUG UAUGUUUGGGC C UUG  
miRNA  3' G               A G     5' 

target: LOC_Os01g51410 
miRNA: osa-miR2094-5p
mfe: -33.2 kcal/mol 
p-value: 0.044053 

position:  494 
target 5' A   G    C            U 3' 
           CAU CA G GCCUGGCGGCCA  
           GUG GU C CGGAUCGUCGGU  
miRNA  3'     G  C U              5' 

target: LOC_Os01g51410 
miRNA: osa-miR2098-3p
mfe: -26.2 kcal/mol 
p-value: 0.082735 

position:  717 
target 5' C      G U         G   A 3' 
           GC CUC C GCUUGACGA GCC  
           CG GAG G CGAACUGUU UGG  
miRNA  3'    U                   C 5' 

target: LOC_Os01g51410 
miRNA: osa-miR2104
mfe: -33.7 kcal/mol 
p-value: 0.065730 

position:  3054 
target 5' G                   A  G 3' 
           UACGCU GCGUUCCCU GC GC  
           GUGCGA CGUAGGGGA CG CG  
miRNA  3'        G         G  G    5' 
Ortholog Group      
Ortholog Groups: OG5_127334
AccessionTaxon
NP_001119106Arabidopsis thaliana
NP_180178Arabidopsis thaliana
NP_195027Arabidopsis thaliana
CMR282CCyanidioschyzon merolae strain 10D
136984Chlamydomonas reinhardtii
ACO64735Micromonas sp. RCC299
NP_001044046 ( LOC_Os01g51410 ) Oryza sativa Japonica Group
NP_001058062Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_10.0001000067Ostreococcus tauri
estExt_Genewise1.C_150397Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2760055Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_150394Physcomitrella patens subsp. patens
29794.m003324Ricinus communis
estExt_gwp_gw1.C_chr_30089Thalassiosira pseudonana CCMP1335
XP_002956892Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR117730.051033IPR020581Glycine cleavage system P protein
PANTHERPTHR11773:SF00.051033No hitNA
HamapMF_0071124.0661024IPR003437Glycine cleavage system P protein, homodimeric
PfamPF023475.6E-19874502IPR020580Glycine cleavage system P-protein, N-terminal
SUPERFAMILYSSF533831.0E-9875501IPR015424Pyridoxal phosphate-dependent transferase
TIGRFAMTIGR004610.0751017IPR003437Glycine cleavage system P protein, homodimeric
Gene3DG3DSA:3.40.640.101.3E-17149379IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PfamPF023471.2E-12513795IPR020580Glycine cleavage system P-protein, N-terminal
SUPERFAMILYSSF533836.7E-102521954IPR015424Pyridoxal phosphate-dependent transferase
Gene3DG3DSA:3.40.640.105.9E-42564805IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
CoilsCoilNA692713No hitNA
SUPERFAMILYSSF533836.7E-1029971018IPR015424Pyridoxal phosphate-dependent transferase

© Center for Bioinformatics(CBI), Peking University