Basic information   
Locus name LOC_Os01g52500
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Macromolecule metabolism
Effect for SenescenceUnclear
Gene DescriptionNADP-dependent malic enzyme, putative, expressed
EvidenceMolecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
biological process
molecular function
Pathway
KEGG
Protein-Protein Interaction
STRING
SequenceLOC_Os01g52500.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g52500 
miRNA: osa-miR1320
mfe: -24.2 kcal/mol 
p-value: 0.029757 

position:  2459 
target 5' A                A    G 3' 
           UGUGAAGUUCCUU GU UCCA  
           AUAUUUUAAGGAG CA AGGU  
miRNA  3' G             G         5' 

target: LOC_Os01g52500 
miRNA: osa-miR159c
mfe: -26.4 kcal/mol 
p-value: 0.045320 

position:  702 
target 5' A       G         G  A 3' 
           GGGGCUU CCUUCAA C AA  
           CCUCGAG GGAAGUU G UU  
miRNA  3' A               A G  A 5' 

target: LOC_Os01g52500 
miRNA: osa-miR159d
mfe: -26.4 kcal/mol 
p-value: 0.053872 

position:  702 
target 5' A       G         G  A 3' 
           GGGGCUU CCUUCAA C AA  
           CCUCGAG GGAAGUU G UU  
miRNA  3' G               A G  A 5' 

target: LOC_Os01g52500 
miRNA: osa-miR159e
mfe: -26.9 kcal/mol 
p-value: 0.037909 

position:  701 
target 5' A        G         G  A 3' 
           AGGGGCUU CCUUCAA C AA  
           UCCUCGAG GGAAGUU G UU  
miRNA  3'                  A G  A 5' 

target: LOC_Os01g52500 
miRNA: osa-miR160a
mfe: -30.9 kcal/mol 
p-value: 0.043847 

position:  261 
target 5' G  G G G      G      U 3' 
           GG G G GGGGGG CGGGCG  
           CC U U UCCCUC GUCCGU  
miRNA  3' A  G A G      G        5' 

target: LOC_Os01g52500 
miRNA: osa-miR160b
mfe: -30.9 kcal/mol 
p-value: 0.044683 

position:  261 
target 5' G  G G G      G      U 3' 
           GG G G GGGGGG CGGGCG  
           CC U U UCCCUC GUCCGU  
miRNA  3' A  G A G      G        5' 

target: LOC_Os01g52500 
miRNA: osa-miR160c
mfe: -30.9 kcal/mol 
p-value: 0.039712 

position:  261 
target 5' G  G G G      G      U 3' 
           GG G G GGGGGG CGGGCG  
           CC U U UCCCUC GUCCGU  
miRNA  3' A  G A G      G        5' 

target: LOC_Os01g52500 
miRNA: osa-miR160d
mfe: -30.9 kcal/mol 
p-value: 0.043787 

position:  261 
target 5' G  G G G      G      U 3' 
           GG G G GGGGGG CGGGCG  
           CC U U UCCCUC GUCCGU  
miRNA  3' A  G A G      G        5' 

target: LOC_Os01g52500 
miRNA: osa-miR160e
mfe: -30.9 kcal/mol 
p-value: 0.045123 

position:  261 
target 5' G  G G G      G      U 3' 
           GG G G GGGGGG CGGGCG  
           CC U U UCCCUC GUCCGU  
miRNA  3' G  G A G      G        5' 

target: LOC_Os01g52500 
miRNA: osa-miR1861n
mfe: -29.3 kcal/mol 
p-value: 0.054506 

position:  747 
target 5' G G            C  C A   U 3' 
           U GGCUUCUGCCAC AG A UCG  
           A UCGAGGACGGUG UC U AGC  
miRNA  3' G G            U          5' 

target: LOC_Os01g52500 
miRNA: osa-miR2103
mfe: -34.0 kcal/mol 
p-value: 0.013989 

position:  247 
target 5' A   C  G               G 3' 
           GAG CG GC UGGGGGGGGGGG  
           CUC GC CG GCCUCUCCCUUU  
miRNA  3' G      G  U              5' 

target: LOC_Os01g52500 
miRNA: osa-miR529a
mfe: -31.8 kcal/mol 
p-value: 0.004084 

position:  258 
target 5' G               G    G 3' 
           GGGGGGGGGGGGGGG GCGG  
           CUUCUUCUCUCUCCC UGUC  
miRNA  3'                 A      5' 
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR234060.01565No hitNA
PANTHERPTHR23406:SF20.01565No hitNA
PIRSFPIRSF0001063.3E-29116575IPR001891Malic oxidoreductase
SUPERFAMILYSSF532231.2E-10236308No hitNA
Gene3DG3DSA:3.40.50.103804.1E-12353306IPR012301Malic enzyme, N-terminal
PfamPF003901.4E-77119298IPR012301Malic enzyme, N-terminal
PRINTSPR000722.5E-85124148IPR001891Malic oxidoreductase
PRINTSPR000722.5E-85184213IPR001891Malic oxidoreductase
PRINTSPR000722.5E-85220242IPR001891Malic oxidoreductase
PRINTSPR000722.5E-85280298IPR001891Malic oxidoreductase
PRINTSPR000722.5E-85305321IPR001891Malic oxidoreductase
ProSitePatternsPS00331NA305321IPR015884Malic enzyme, conserved site
Gene3DG3DSA:3.40.50.7201.0E-105307566IPR016040NAD(P)-binding domain
PfamPF039491.8E-90309562IPR012302Malic enzyme, NAD-binding
SMARTSM009194.0E-113309562IPR012302Malic enzyme, NAD-binding
SUPERFAMILYSSF517358.3E-92309568No hitNA
PRINTSPR000722.5E-85336352IPR001891Malic oxidoreductase
PRINTSPR000722.5E-85439455IPR001891Malic oxidoreductase

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