Basic information   
Locus name LOC_Os01g59600
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Macromolecule metabolism
Effect for SenescenceUnclear
Gene DescriptionProteasome subunit alpha type 3, putative, expressed
EvidenceMolecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
biological process
cellular component
molecular function
Pathway
Reactome
Protein-Protein Interaction
STRING
SequenceLOC_Os01g59600.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g59600 
miRNA: osa-miR1846c-3p
mfe: -35.5 kcal/mol 
p-value: 0.004934 

position:  216 
target 5' G   G             A  U 3' 
           CGG GAGUGGAUCGGGG UC  
           GUC CUCGUCUGGCCCC AG  
miRNA  3' G   G                U 5' 

target: LOC_Os01g59600 
miRNA: osa-miR2275a
mfe: -25.1 kcal/mol 
p-value: 0.028119 

position:  465 
target 5' A  U    C        U    U 3' 
           GA GAUG UGGAGGGA CUAA  
           CU CUAU ACCUCCUU GGUU  
miRNA  3' A       A        U    U 5' 

target: LOC_Os01g59600 
miRNA: osa-miR2275b
mfe: -25.1 kcal/mol 
p-value: 0.026498 

position:  465 
target 5' A  U    C        U    U 3' 
           GA GAUG UGGAGGGA CUAA  
           CU CUAU ACCUCCUU GGUU  
miRNA  3' A       A        U    U 5' 
Ortholog Group      
Ortholog Groups: OG5_127755
AccessionTaxon
NP_180270Arabidopsis thaliana
CMO197CCyanidioschyzon merolae strain 10D
183771Chlamydomonas reinhardtii
NP_113179Guillardia theta
ACO64819Micromonas sp. RCC299
NP_001044588 ( LOC_Os01g59600 ) Oryza sativa Japonica Group
NP_001055904Oryza sativa Japonica Group
gw1.10.00.326.1Ostreococcus tauri
estExt_fgenesh1_pg.C_2140021Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_720023Physcomitrella patens subsp. patens
29977.m000262Ricinus communis
estExt_Genewise1.C_chr_10857Thalassiosira pseudonana CCMP1335
XP_002952672Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF562351.4E-733239No hitNA
PANTHERPTHR115993.2E-1534245No hitNA
PANTHERPTHR11599:SF103.2E-1534245No hitNA
Gene3DG3DSA:3.60.20.102.7E-826239No hitNA
PfamPF105841.4E-14830IPR000426Proteasome, alpha-subunit, N-terminal domain
ProSitePatternsPS00388NA830IPR000426Proteasome, alpha-subunit, N-terminal domain
SMARTSM009482.9E-10830IPR000426Proteasome, alpha-subunit, N-terminal domain
PfamPF002271.9E-5031216IPR001353Proteasome, subunit alpha/beta
ProSiteProfilesPS5147551.035216IPR023332Proteasome A-type subunit
CoilsCoilNA229250No hitNA

© Center for Bioinformatics(CBI), Peking University