Basic information   
Locus name LOC_Os01g08270
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryOthers:Protein biosynthesis
Effect for SenescenceUnclear
Gene DescriptionAminotransferase class I and II family protein
EvidenceMolecular evidence:SSH [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
molecular function
Pathway
Reactome
Protein-Protein Interaction
STRING
SequenceLOC_Os01g08270.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g08270 
miRNA: osa-miR1851
mfe: -28.0 kcal/mol 
p-value: 0.038971 

position:  670 
target 5' U  U C               A 3' 
           CC A AUGUCAUUCCAGAUG  
           GG U UACGGUAGGGUCUGC  
miRNA  3' C  U U                 5' 
Ortholog Group      
Ortholog Groups: OG5_140291
AccessionTaxon
NP_178152Arabidopsis thaliana
CMA077CCyanidioschyzon merolae strain 10D
146923Chlamydomonas reinhardtii
NP_001042188 ( LOC_Os01g08270 ) Oryza sativa Japonica Group
e_gw1.9.292.1Physcomitrella patens subsp. patens
29841.m002756Ricinus communis
fgenesh1_pg.C_bd_20x5000021Thalassiosira pseudonana CCMP1335
XP_002948580Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR117511.4E-2637393No hitNA
PANTHERPTHR11751:SF311.4E-2637393No hitNA
SUPERFAMILYSSF533831.3E-8312386IPR015424Pyridoxal phosphate-dependent transferase
PfamPF001555.0E-5130380IPR004839Aminotransferase, class I/classII
Gene3DG3DSA:3.40.640.105.9E-5843273IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
ProSitePatternsPS00105NA230243IPR004838Aminotransferases, class-I, pyridoxal-phosphate-binding site
Gene3DG3DSA:3.90.1150.101.6E-22274387IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2

© Center for Bioinformatics(CBI), Peking University