Basic information   
Locus name LOC_Os01g20830
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryOthers:Detoxification
Effect for SenescenceUnclear
Gene DescriptionHeavy metal-associated domain containing protein
EvidenceMolecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References
1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y
Identification of early senescence-associated genes in rice flag leaves.
Plant Mol. Biol. 2008 May;67(1-2):37-55

Gene Ontology
biological process
molecular function
Protein-Protein Interaction
STRING
SequenceLOC_Os01g20830.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os01g20830 
miRNA: osa-miR1857-5p
mfe: -24.9 kcal/mol 
p-value: 0.048703 

position:  276 
target 5' U     A               U 3' 
           CCUCG GCUUCAGG AAGCUA  
           GGAGU CGAGGUUU UUUGGU  
miRNA  3'       A        U        5' 

target: LOC_Os01g20830 
miRNA: osa-miR2102-3p
mfe: -38.0 kcal/mol 
p-value: 0.005176 

position:  646 
target 5' G      A             C 3' 
           GCCG C GAGCCGGCACCAU  
           CGGU G CUUGGCCGUGGUA  
miRNA  3' G    G C             C 5' 
Ortholog Group      
Ortholog Groups: OG5_242573
AccessionTaxon
NP_001042852 ( LOC_Os01g20830 ) Oryza sativa Japonica Group
29726.m004108Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.1007.7E-17868No hitNA
PANTHERPTHR228142.5E-1558241No hitNA
PANTHERPTHR22814:SF392.5E-1558241No hitNA
SUPERFAMILYSSF550081.0E-15967IPR006121Heavy metal-associated domain, HMA
PfamPF004033.6E-131567IPR006121Heavy metal-associated domain, HMA
ProSiteProfilesPS5084611.81772IPR006121Heavy metal-associated domain, HMA

© Center for Bioinformatics(CBI), Peking University