Basic information   
Locus name AT2G41060
AliasUBA2b
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers:defense
Effect for Senescencepromote
Gene Descriptionwound-responsive RNA-binding protein
EvidenceGenetic evidence:Transgene [Ref 1]
References
1: Kim CY, Bove J, Assmann SM
Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death.
New Phytol. 2008;180(1):57-70

Gene Ontology
molecular function
Protein-Protein Interaction
STRING
SequenceAT2G41060.1 | Genomic | mRNA | CDS | Protein
AT2G41060.2 | Genomic | mRNA | CDS | Protein
Mutant information   
Mutated 1
Mutant name 2x35S-UBA2b-OX
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Mutated 2
Mutant name DEX-UBA2b-OX
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
miRNA Interaction      
Details
target: AT2G41060.1 
miRNA: ath-miR159a
mfe: -30.2 kcal/mol 
p-value: 0.006073 

position:  107 
target 5' G              A    C 3' 
           AGGGCUCUCUUCAA UCAA  
           UCUCGAGGGAAGUU GGUU  
miRNA  3' A              A    U 5' 

target: AT2G41060.1 
miRNA: ath-miR159b
mfe: -30.7 kcal/mol 
p-value: 0.004828 

position:  106 
target 5' A               A    C 3' 
           GAGGGCUCUCUUCAA UCAA  
           UUCUCGAGGGAAGUU GGUU  
miRNA  3'                 A    U 5' 

target: AT2G41060.1 
miRNA: ath-miR159c
mfe: -28.8 kcal/mol 
p-value: 0.011814 

position:  105 
target 5' U  A             A    C 3' 
           AG GGGCUCUCUUCAA UCAA  
           UC CUCGAGGGAAGUU GGUU  
miRNA  3'                  A    U 5' 

target: AT2G41060.1 
miRNA: ath-miR2938
mfe: -32.6 kcal/mol 
p-value: 0.003331 

position:  420 
target 5' U       G             A 3' 
           UGGAACC UUUUCAAAGGAUC  
           ACCUUGG GAGAGUUUUCUAG  
miRNA  3' G                       5' 

target: AT2G41060.2 
miRNA: ath-miR2938
mfe: -32.6 kcal/mol 
p-value: 0.003164 

position:  271 
target 5' U       G             A 3' 
           UGGAACC UUUUCAAAGGAUC  
           ACCUUGG GAGAGUUUUCUAG  
miRNA  3' G                       5' 
Ortholog Group      
Ortholog Groups: OG5_133793
AccessionTaxon
NP_001078035 ( AT2G41060 ) Arabidopsis thaliana
NP_181639Arabidopsis thaliana
NP_188119Arabidopsis thaliana
NP_567042Arabidopsis thaliana
NP_850710Arabidopsis thaliana
NP_850711Arabidopsis thaliana
NP_974317Arabidopsis thaliana
NP_001042672Oryza sativa Japonica Group
NP_001043567Oryza sativa Japonica Group
NP_001054022Oryza sativa Japonica Group
gw1.188.84.1Physcomitrella patens subsp. patens
gw1.59.258.1Physcomitrella patens subsp. patens
gw1.70.172.1Physcomitrella patens subsp. patens
29900.m001607Ricinus communis
30006.m000276Ricinus communis
30099.m001684Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR240111.8E-2451451No hitNA
PANTHERPTHR24011:SF921.8E-2451451No hitNA
Gene3DG3DSA:3.30.70.3308.9E-21127203IPR012677Nucleotide-binding, alpha-beta plait
ProSiteProfilesPS5010214.1128236IPR000504RNA recognition motif domain
SUPERFAMILYSSF549281.2E-20128208No hitNA
SMARTSM003603.5E-19129201IPR000504RNA recognition motif domain
PfamPF000766.1E-15130194IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3302.9E-18215307IPR012677Nucleotide-binding, alpha-beta plait
SUPERFAMILYSSF549284.2E-21226332No hitNA
ProSiteProfilesPS5010213.8227314IPR000504RNA recognition motif domain
SMARTSM003602.4E-17228300IPR000504RNA recognition motif domain
PfamPF000761.3E-12229298IPR000504RNA recognition motif domain

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