Basic information   
Locus name AT1G02340
AliasFBI1/HFR1/REP1/RSF1
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation:bHLH
Effect for Senescenceunclear
Gene Descriptionlong hypocotyl in far-red 1 (HFR1) / reduced phytochrome signaling (REP1) / basic helix-
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston V
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
Protein-Protein Interaction
STRING
SequenceAT1G02340.1 | Genomic | mRNA | CDS | Protein
Microarray   
Expression Level (Log2 ratio)
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction      
Details
target: AT1G02340.1 
miRNA: ath-miR826
mfe: -26.5 kcal/mol 
p-value: 0.013376 

position:  277 
target 5' A             G      C 3' 
           ACG GUCUAAAAU GGGCUA  
           UGC UAGGUUUUG CCUGAU  
miRNA  3' G   A         G        5' 

target: AT1G02340.1 
miRNA: ath-miR831
mfe: -25.3 kcal/mol 
p-value: 0.015269 

position:  590 
target 5' G              A    G G 3' 
           AAGAAGAG ACGAG AGAU A  
           UUCUUCUC UGCUU UCUA U  
miRNA  3' G        A     C    G   5' 

target: AT1G02340.1 
miRNA: ath-miR837-5p
mfe: -22.8 kcal/mol 
p-value: 0.047353 

position:  243 
target 5' A                    G 3' 
           GAAA GAGCAAGAAG UGAU  
           CUUU CUUGUUCUUU ACUA  
miRNA  3' A    G          G      5' 
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
ProSiteProfilesPS5088813.8134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-9139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-13144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PANTHERPTHR125651.5E-28144286No hitNA
PfamPF000102.0E-7144184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SUPERFAMILYSSF474598.1E-14144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Subcellular Localization   
Localization 1
Localizationnucleus
EvidenceLocalization with GFP-fusion protein (GFP:cDNA)
Pubmed ID10737809
Localization 2
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787

© Center for Bioinformatics(CBI), Peking University