Basic information   
Locus name AT2G43000
AliasANAC042
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation:NAC
Effect for Senescenceunclear
Gene Descriptionno apical meristem (NAM) family protein
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
Protein-Protein Interaction
STRING
SequenceAT2G43000.1 | Genomic | mRNA | CDS | Protein
Mutant information   
Mutated 1
Mutant name jub1-1
Mutant/Transgenic mutant
Ecotype Col-0
Mutagenesis type T-DNA insertion_knock out
Mutated 2
Mutant name 35S-JUB1
Mutant/Transgenic transgenic
Ecotype Col-0
Mutagenesis type transgene
Microarray   
Expression Level (Log2 ratio)
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_190119
AccessionTaxon
NP_181828 ( AT2G43000 ) Arabidopsis thaliana
NP_001051438Oryza sativa Japonica Group
30169.m006343Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR315552.1E-1471274No hitNA
ProSiteProfilesPS5100553.118167IPR003441No apical meristem (NAM) protein
SUPERFAMILYSSF1019411.7E-5519166IPR003441No apical meristem (NAM) protein
PfamPF023651.6E-4920143IPR003441No apical meristem (NAM) protein
Mutant Image      
nac42 mutant exhibited early senescence.   
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787

© Center for Bioinformatics(CBI), Peking University